Hmmm.
Drone-Hotkeys is the one I :facepalm:'d at most recently.
Esc-Menu -> Shortcuts -> Use Eyes (I am too tired to log in and get exact directions tonight)
I use Alt+E for All Drones: Engage. Alt + R for All Drones: Return to Bay.
Iz Gud.
Also - for clearing of cluttered module sections.
using that lovely little white arrow below your mods there is an option to "Hide Passive Modules"
Amazingly enough... ENOURMOUS amounts of screenshots I have seen still have these mods there ._.
I never understood why....
Oohhh! Also Ctrl + F in space to bring up fitting window.
-_- made me headdesk when i realised I could do that instead of docking to read my fit or give it to other people in my corp (Used to happen at least once or twice every hour or so on a busy day - Being Mr. HEY DUZ THIZ FIT WORKZ!?!? got old quick

)
Using my extensive knowledge of EVE I know there are more, but tired brain is tired and cannot remember anymore.