I'd like to see factional warfare, both as a storyline and as a mechanic, end.
It's gotten the Empires nowhere and once Heth and Jamyl are gone there's really no reason for it to continue.
Sure there is.
Roden and Blaque are not exactly peaceniks. Roden is a corporate weapons dealer, who benefits immensely (economically and politically) from Fed Navy re-armament contracts to support (/reintegrate) "friendly" Caldari corporations like Ishukone. Blaque is a Gallente supremacist, a U-Nat in all but name, who would like to see the State relegated to a third tier power. Instead of having the State be the aggressor, the Federation is the aggressor.
The Minmatar are not interested in peace with the Empire and so long as the Federation continues to support their war effort, will gladly kill those who follow the Amarrian faith in a cultural war of revenge.